An efficient and flexible tool for processing single-cell sequencing data, focused on single-cell transcriptomics and feature barcoding.
Alevin-fry is a suite of tools designed for rapid, accurate, and memory-frugal processing of single-cell and single-nucleus sequencing data. It consumes RAD files generated by piscem or salmon alevin, performing operations like generating permit lists and estimating the number of distinct molecules from each gene within each cell. The tool prioritizes safety, accuracy, and efficiency in terms of both time and memory. It is designed as a successor to alevin, subsuming its core features while introducing new capabilities and significantly improving performance. Alevin-fry supports enhanced transcriptomes using tools like pyroe, allowing for spliced and intronic or spliced and unspliced analysis. Output can be easily integrated into the R ecosystem using the fishpond package and assessed using alevinqc.
Alevin-fry is a suite of tools designed for rapid, accurate, and memory-frugal processing of single-cell and single-nucleus sequencing data.
Explore all tools that specialize in single-cell rna-seq quantification. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
Explore all tools that specialize in feature barcoding analysis. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
Explore all tools that specialize in permit list generation. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
Explore all tools that specialize in transcriptome alignment. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
Explore all tools that specialize in gene expression quantification. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
Explore all tools that specialize in data pre-processing for single-cell data. This domain focus ensures alevin-fry delivers optimized results for this specific requirement.
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