
KEGG
The gold standard for biological pathway mapping and genomic functional annotation.
Reactome is a free, open-source, curated and peer-reviewed pathway database for visualizing, interpreting and analyzing pathway knowledge.

Reactome is a free, open-source, curated and peer-reviewed pathway database dedicated to providing intuitive bioinformatics tools. It facilitates the visualization, interpretation, and analysis of pathway knowledge, supporting research in basic science, genome analysis, modeling, systems biology, and education. Reactome's core capabilities include pathway browser for interactive visualization, analysis tools for identifier mapping and over-representation analysis, and ReactomeFIViz for network pattern discovery related to diseases like cancer. The database is continually updated with new findings, pathway information, and tools. Supported by grants from the US National Institutes of Health and the European Molecular Biology Laboratory, Reactome aims to be a comprehensive resource for researchers exploring biological pathways and their implications.
Reactome is a free, open-source, curated and peer-reviewed pathway database dedicated to providing intuitive bioinformatics tools.
Explore all tools that specialize in visualize biological pathways. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Explore all tools that specialize in interpret pathway knowledge. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Explore all tools that specialize in analyze pathway data. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Explore all tools that specialize in identify enriched pathways. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Explore all tools that specialize in map identifiers to pathways. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Explore all tools that specialize in explore disease-related pathways. This domain focus ensures Reactome delivers optimized results for this specific requirement.
Allows users to interactively visualize and explore biological pathways, zooming in on reactions and molecules. It uses a graphical interface to represent pathway components and their relationships.
Offers a suite of tools for pathway identifier mapping, over-representation analysis, and gene expression analysis. These tools utilize statistical methods to identify significant pathways related to user-provided data.
A Cytoscape app designed to find pathways and network patterns related to diseases like cancer. It uses functional interaction networks to identify disease-specific subnetworks.
Provides programmatic access to Reactome data, allowing developers to integrate Reactome pathways into their applications. It offers various API endpoints for retrieving pathway information.
Stores Reactome data in a graph format, allowing for efficient querying and traversal of pathway relationships. It uses Neo4j technology for data storage and retrieval.
Access the Reactome website (https://reactome.org).
Explore the Pathway Browser to visualize pathways.
Use the search function to find specific reactions, proteins, or pathways.
Analyze a gene list using the 'Analyse gene list' tool.
Analyze gene expression data with the 'Analyse gene expression' tool.
Consult the Userguide documentation for detailed instructions.
Explore the ReactomeFIViz tool for network analysis.
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