
STRING
STRING is a database of known and predicted protein-protein interactions.
WikiPathways is an open science platform for biological pathways contributed, updated, and used by the research community.

WikiPathways is a collaboratively edited, open science platform dedicated to curating biological pathways. Researchers can contribute to, update, and utilize the pathway information available. The platform enables exploration of pathways by organism, community, and ontology annotations. Users can analyze and visualize data in the context of pathway diagrams, and download pathway information in various formats, including GPML, GMT, and SVG. It provides programmatic access via API, Linked Data, SPARQL, R, and Python. WikiPathways serves as a valuable resource for researchers in systems biology, bioinformatics, and related fields by fostering knowledge sharing and facilitating pathway-based data analysis.
WikiPathways is a collaboratively edited, open science platform dedicated to curating biological pathways.
Explore all tools that specialize in browse biological pathways. This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
Explore all tools that specialize in contribute to pathway curation. This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
Explore all tools that specialize in download pathway data in various formats (gpml, gmt, svg). This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
Explore all tools that specialize in analyze experimental data in the context of pathways. This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
Explore all tools that specialize in visualize pathway diagrams. This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
Explore all tools that specialize in access pathway data programmatically via api. This domain focus ensures WikiPathways delivers optimized results for this specific requirement.
GPML is an XML-based format specifically designed for representing biological pathways, including nodes, edges, and annotations.
Web-based pathway editor for creating and modifying pathways with functionalities for adding genes, metabolites, and interactions.
Programmatic access to pathway data and metadata through a RESTful API.
Integration with Linked Data principles, enabling semantic querying and linking of pathways to other biological databases.
Open platform where researchers can contribute their pathway knowledge, fostering community curation and expansion of the database.
Visit the WikiPathways website (https://www.wikipathways.org).
Browse existing pathways using the search function or the organism/community/annotation filters.
Download pathway files in GPML, GMT, or SVG format.
Explore the API documentation to understand programmatic access.
Create an account if you want to contribute or edit pathways.
Familiarize yourself with the pathway curation guidelines.
Start contributing to or creating pathways using the pathway editor.
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Verified feedback from other users.
"WikiPathways is a well-regarded, open-source resource for biological pathway information, appreciated for its community-driven curation and diverse pathway collection. The ability to download data in multiple formats is a useful feature."
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STRING is a database of known and predicted protein-protein interactions.

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